Bulk Data Download
Below you can download the complete datasets processed by CLASHub. Files are provided in CSV and/or BW format.
1. CLASH Data (Interaction Sites)
* Files labeled "Expanded" include additional columns for average miRNA and/or gene expression levels derived from the corresponding RNA-seq/miRNA-seq data.
* BW (BigWig) files are provided for genome browser visualization (e.g., IGV).
| Species | Cell Line / Tissue | CSV File Name | Download | BW File Name | Download |
|---|---|---|---|---|---|
| Human | 501Mel | CLASH_human_501Mel_Expanded.csv | CSV | CLASH_human_501Mel.bw | BW |
| Human | A549 | CLASH_human_A549_Expanded.csv | CSV | CLASH_human_A549.bw | BW |
| Human | Colorectal Tissue | CLASH_human_Colorectal_tissue.csv | CSV | CLASH_human_Colorectal_tissue.bw | BW |
| Human | D425 | CLASH_human_D425_Expanded.csv | CSV | CLASH_human_D425.bw | BW |
| Human | ES2 | CLASH_human_ES2_Expanded.csv | CSV | CLASH_human_ES2.bw | BW |
| Human | H1299 | CLASH_human_H1299_Expanded.csv | CSV | CLASH_human_H1299.bw | BW |
| Human | HCT116 | CLASH_human_HCT116.csv | CSV | CLASH_human_HCT116.bw | BW |
| Human | HEK293T | CLASH_human_HEK293T_Expanded.csv | CSV | CLASH_human_HEK293T.bw | BW |
| Human | HepG2 | CLASH_human_HepG2_Expanded.csv | CSV | CLASH_human_HepG2.bw | BW |
| Human | MB002 | CLASH_human_MB002_Expanded.csv | CSV | CLASH_human_MB002.bw | BW |
| Human | MDAMB231 | CLASH_human_MDAMB231_Expanded.csv | CSV | CLASH_human_MDAMB231.bw | BW |
| Human | Ovcar8 | CLASH_human_Ovcar8_Expanded.csv | CSV | CLASH_human_Ovcar8.bw | BW |
| Human | T98G | CLASH_human_T98G_Expanded.csv | CSV | CLASH_human_T98G.bw | BW |
| Human | TIVE | CLASH_human_TIVE.csv | CSV | CLASH_human_TIVE.bw | BW |
| Human | U87MG | CLASH_human_U87MG_Expanded.csv | CSV | CLASH_human_U87MG.bw | BW |
| Mouse | 3T12 | CLASH_mouse_3T12.csv | CSV | CLASH_mouse_3T12.bw | BW |
| Mouse | Cortex | CLASH_mouse_Cortex.csv | CSV | CLASH_mouse_Cortex.bw | BW |
| Mouse | HE2 1B | CLASH_mouse_HE2_1B.csv | CSV | CLASH_mouse_HE2_1B.bw | BW |
| Mouse | Heart | CLASH_mouse_Heart_Expanded.csv | CSV | CLASH_mouse_Heart.bw | BW |
| Mouse | Kidney | CLASH_mouse_Kidney_Expanded.csv | CSV | CLASH_mouse_Kidney.bw | BW |
| Mouse | MEF | CLASH_mouse_MEF_Expanded.csv | CSV | CLASH_mouse_MEF.bw | BW |
| Mouse | Striatal Cell | CLASH_mouse_Striatal_Cell_Expanded.csv | CSV | CLASH_mouse_Striatal_Cell.bw | BW |
| Drosophila | S2 | CLASH_Drosophila_S2_Expanded.csv | CSV | CLASH_Drosophila_S2.bw | BW |
| C. elegans | Embryo | CLASH_Celegans_Embryo_Expanded.csv | CSV | CLASH_Celegans_Embryo.bw | BW |
| C. elegans | L4 | CLASH_Celegans_L4_Expanded.csv | CSV | CLASH_Celegans_L4.bw | BW |
2. Gene Abundance (TPM)
| Species | CSV File Name | Download |
|---|---|---|
| Human | gene_abundance_Human_TPM.csv | CSV |
| Mouse | gene_abundance_Mouse_TPM.csv | CSV |
| Drosophila | gene_abundance_Drosophila_TPM.csv | CSV |
| C. elegans | gene_abundance_Celegans_TPM.csv | CSV |
3. miRNA Abundance (CPM)
| Species | CSV File Name | Download |
|---|---|---|
| Human | miRNA_abundance_Human_CPM.csv | CSV |
| Mouse | miRNA_abundance_Mouse_CPM.csv | CSV |
| Drosophila | miRNA_abundance_Drosophila_CPM.csv | CSV |
| C. elegans | miRNA_abundance_Celegans_CPM.csv | CSV |